TF_binding_site [SO_0000235]

A DNA site where a transcription factor binds.

TF_binding_site

ID: SO_0000235

Class

A DNA site where a transcription factor binds.

Definition updated along with definitions in Mejia-Almonte et.al PMID:32665585. Added relationship part_of SO:0000727 CRM in place of previous CRM relationship has_part TF_binding_site August 2020 in response to requests from GREEKC initiative. Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527.

Open in VFB 3D Browser →

Classification

Relationships

is part of: cis_regulatory_module

Alternative Names

Synonym	Scope	Reference
TF binding site	exact synonym
transcription factor binding site	exact synonym

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.

n style="display:flex;"> "Entity", "Class" ], "short_form": "SO_0001055", "label": "transcriptional_cis_regulatory_region" }, { "symbol": "", "iri": "http://purl.obolibrary.org/obo/SO_0001654", "types": [ "Entity", "Class" ], "short_form": "SO_0001654", "label": "nucleotide_to_protein_binding_site" } ], "relationships": [ { "relation": { "iri": "http://purl.obolibrary.org/obo/BFO_0000050", "label": "is part of", "type": "part_of" }, "object": { "symbol": "", "iri": "http://purl.obolibrary.org/obo/SO_0000727", "types": [ "Entity", "Class" ], "short_form": "SO_0000727", "label": "cis_regulatory_module" } } ], "xrefs": [], "anatomy_channel_image": [], "pub_syn": [ { "synonym": { "scope": "has_exact_synonym", "label": "transcription factor binding site", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "TF binding site", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [ { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } ] }

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.