stop_gained [SO_0001587]

A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide.
Tags:

stop_gained

ID: SO_0001587

Class

A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide.

EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence).

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Classification

Alternative Names

Synonym Scope Reference
stop codon gained related synonym
nonsense codon exact synonym
VEP:stop_gained exact synonym VAR
snpEff:STOP_GAINED exact synonym VAR
ANNOVAR:stopgain exact synonym //www.openbioinformatics.org/annovar/annovar_download.html
stop gained exact synonym //ensembl.org/info/docs/variation/index.html
Jannovar:stop_gained exact synonym //doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
VAAST:stop_gained exact synonym VAR
Seattleseq:stop-gained exact synonym VAR
nonsense exact synonym //ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd
VAT:prematureStop exact synonym VAR
Seattleseq:stop-gained-near-splice related synonym VAR

References